Hi Joan,
This game is so non-linear that it's difficult to pinpoint the triggers for Dr. Nemeth becoming available again, or Lena returning home. Are you remembering to check inside the Pyramid itself, which has multiple locations? Have you checked your map after 7pm also, to see if any nighttime locations inside the Pyramid are active?
If you take a look at Phoenix's journal you should see certain entries highlighted in red -- those are outstanding tasks to be completed. I found checking against this journal invaluable when I was playing the game.
Perhaps let us know what they are, and we might be able to nudge you in the right direction.